Model Overview
Contents
Parameters for model reactions
Reaction | Parameter | Value | Units | Distribution
Mode |
Confidence
Interval Factor |
Location
parameter (μ) |
Scale
parameter (σ) |
---|---|---|---|---|---|---|---|
Binding of R2 to OR operator | 0.005−5.8 | 0.15 | 20 | −0.72886 | 1.08086 | ||
0.09−1.2 | 0.3 | 3.5 | −0.89899 | 0.55225 | |||
Binding of R2 to OA operator | 0.005−5.8 | 0.15 | 20 | −0.72886 | 1.08086 | ||
0.09−1.2 | 0.3 | 3.5 | −0.89899 | 0.55225 | |||
Binding of R2 to A | Failed to parse (Cannot store math image on filesystem.): 10^{3}−10^{6} | Failed to parse (Cannot store math image on filesystem.): 7 \cdot 10^{4} | 13 | 12.088 | 0.96535 | ||
Failed to parse (Cannot store math image on filesystem.): 1329.8 | 2.5 | 8.3942 | 1.0961 | ||||
Binding of R2 to C | Failed to parse (Cannot store math image on filesystem.): 10^{-2}-10^{-4} | 5 | 1000 | 5.27937 | 1.9157 | ||
1.3 | 100 | 2.3977 | 1.46129 | ||||
Binding of A-R2 to OA' operator | 0.005−5.8 | 0.15 | 30 | −0.4963 | 1.18356 | ||
0.09−0.85 | 0.3 | 4 | −0.8437 | 0.6002 | |||
Synthesis of C | 0.003−0.01 | 0.005 | 10 | −4.5042 | 0.8911 | ||
Transcription of r | 0.16−8.24 | 0.88 | 10 | 0.66625 | 0.8911 | ||
Transcription of a | 0.11−5.65 | 0.60 | 10 | 0.28326 | 0.8911 | ||
Antisense interaction between r and a | 0.20−89 | 5 | 10 | 2.4035 | 0.8911 | ||
0.006−6 | 0.6 | 10 | 0.2833 | 0.8911 | |||
Translation of R | 0.165−5.86 | 0.89 | 10 | 0.6776 | 0.8911 | ||
Translation of A | 0.11−4 | 0.61 | 10 | 0.2998 | 0.8911 | ||
Formation of homo-dimer R2 | 35.3−114 | 30 | 30 | 4.8018 | 1.1835 | ||
2.12−6.84 | 2 | 30 | 2.094 | 1.1835 | |||
Degradation of r | 0.03−0.4 | 0.15 | 3 | −1.6523 | 0.4947 | ||
Degradation of R | Failed to parse (Cannot store math image on filesystem.): 1.62 \cdot 10^{-3} | 100 | −4.28997 | 1.4613 | |||
Degradation of R2 | Failed to parse (Cannot store math image on filesystem.): 1.62 \cdot 10^{-3} | 100 | −4.28997 | 1.4613 | |||
Degradation of a | 0.03−0.4 | 0.15 | 3 | −1.6523 | 0.4947 | ||
Degradation of A | Failed to parse (Cannot store math image on filesystem.): 1.62 \cdot 10^{-3} | 100 | −4.28997 | 1.4613 | |||
Degradation of C | Failed to parse (Cannot store math image on filesystem.): 2.86 \cdot 10^{-4}- 2 \cdot 10^{-2} | Failed to parse (Cannot store math image on filesystem.): 2 \cdot 10^{-4} | 10 | −7.7231 | 0.8911 | ||
Degradation of C2-R2 | Failed to parse (Cannot store math image on filesystem.): 1.62 \cdot 10^{-3} | 100 | −4.28997 | 1.4613 | |||
Degradation of A-R2 | Failed to parse (Cannot store math image on filesystem.): 1.62 \cdot 10^{-3} | 100 | −4.28997 | 1.4613 | |||
Degradation of r-a | 0.35−34.7 | 5 | 6 | 2.1513 | 0.7361 | ||
Diffusion of C and Ce | 0.1−24 | 8 | 2 | 2.188 | 0.3295 | ||
Degradation of Ce | Failed to parse (Cannot store math image on filesystem.): 2.86 \cdot 10^{-4}- 2 \cdot 10^{-2} | Failed to parse (Cannot store math image on filesystem.): 2 \cdot 10^{-4} | 10 | −7.7231 | 0.8911 | ||
Cellular growth | Failed to parse (PNG conversion failed; check for correct installation of latex and dvipng (or dvips + gs + convert)): μ | 0.0004−0.011 | 0.001 | 10 | −6.1137 | 0.8911 |
Parameters for cell colony growth
Parameter | Value | Units |
---|---|---|
Failed to parse (PNG conversion failed; check for correct installation of latex and dvipng (or dvips + gs + convert)): τ | ||
Failed to parse (PNG conversion failed; check for correct installation of latex and dvipng (or dvips + gs + convert)): λ | ||
Initial concentrations of species
Species | Initial concentration | Units | Compartment |
---|---|---|---|
OR | Cell | ||
OA | Cell | ||
OA' | Cell | ||
OR-R2 | Cell | ||
OA-R2 | Cell | ||
OA'-AR2 | Cell | ||
r | Cell | ||
a | Cell | ||
r-a | Cell | ||
R | Cell | ||
R2 | Cell | ||
A | Cell | ||
C | Cell | ||
AR2 | Cell | ||
C2R2 | Cell | ||
Ce | Environment |