Model Overview
Contents
List of Model Reactions
*1 Reactions taking place only in the scenarios which includes the activating complex
*2 Reactions taking place only in the scenarios which includes the antisense RNA interactions
*3 Reactions taking place only in the scenarios which include the activation of scbA by
Reactions |
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*1
*1 *1 *1 *1 *1
*1 *3 *3 *3 *3 *2
*1 *2
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Parameters for model reactions
Failed to parse (lexing error): {|class="wikitable" <table border='1' style="text-align:center"> ! Reaction ! Parameter ! Values in literature ! Units ! Mode ! Spread ! Location parameter (μ) ! Scale parameter (σ) |- |rowspan="2" |[[Binding of R2 to OR operator |Binding of R<sub>2</sub> to OR operator]] |<math>K_{d1},K_{d7} |0.005−5.8 | |0.299 |6.8 |0.15471 |1.1661 |- | |0.09−0.846 | |0.489 |1.98 |−0.37642 |0.58225 |- |rowspan="2" |Binding of R2 to OA operator | |0.005−5.8 | |0.299 |6.8 |0.15471 |1.1661 |- | |0.09−0.846 | |0.489 |1.98 |−0.37642 |0.58225 |- |rowspan="2" |Binding of R2 to A | | | | |10.02 |13.192 |1.2977 |- | | | |1879.7 |23.13 |9.9423 |1.5503 |- |rowspan="2" |Binding of R2 to C | | | |1.58 |730.63 |5.9389 |2.3412 |- | | | |0.816 |244 |4.2872 |2.119 |- |rowspan="2" |Binding of A-R2 to OA' operator | |0.005−5.8 | |0.299 |6.8 |0.15471 |1.1661 |- | |0.09−0.846 | |0.489 |1.98 |−0.37642 |0.58225 |- |Synthesis of C | |0.00315−85.5 | |0.094 |60.49 |0.87914 |1.8017 |- |rowspan="3" |Transcription of r | |0.16−8.24 | |0.8346 |3.55 |0.63056 |0.90076 |- | |18.2−33 | |20.7 |1.34 |3.1107 |0.28276 |- | |0.0518-14.5 | |0.867 |4.09 |0.78694 |0.96428 |- |rowspan="3" |Transcription of a | |0.001−0.2 | |0.0037 |10.93 |−3.8324 |1.3259 |- | |0.11−5.65 | |0.572 |3.5 |0.2514 |0.89956 |- | |0.039-8.82 | |0.587 |3.875 |0.35255 |0.94054 |- |rowspan="2" |Antisense interaction between r and a | |0.4−89 | |7.8 |7.27 |3.4665 |1.1882 |- | |0.006−6 | |0.223 |4.8 |−0.43359 |1.0326 |- |Translation of R | |0.165−5.86 | |0.744 |3.2 |0.42952 |0.85176 |- |Translation of A | |0.11−4 | |0.5 |3.2 |0.053356 |0.85327 |- |rowspan="2" |Formation of homo-dimer R2 | |2.58-42.9 | |3.89 |1.9 |1.6716 |0.55779 |- | |0.144-51.2 | |1.1997 |21.7 |2.5303 |1.5324 |- |Degradation of r | |0.03−0.365 | |0.14 |2.06 |−1.5916 |0.60824 |- |Degradation of R | | | | |1.78 |−6.2837 |0.50981 |- |Degradation of R2 | | | | |1.78 |−6.2837 |0.50981 |- |Degradation of a | |0.03−0.365 | |0.14 |2.06 |−1.5916 |0.60824 |- |Degradation of A | | | | |1.78 |−6.2837 |0.50981 |- |Degradation of C | | | | |5.1 |−4.6234 |1.0539 |- |Degradation of C2-R2 | | | | |1.78 |−6.2837 |0.50981 |- |Degradation of A-R2 | | | | |1.78 |−6.2837 |0.50981 |- |Degradation of r-a | |0.35−69.3 | |4.9 |14.1 |2.5669 |0.98835 |- |Diffusion of C and Ce | |0.1−24 | |2.8 |4.27 |1.9947 |0.98233 |- |Degradation of Ce | | | | |5.1 |−4.6234 |1.0539 |}