Model Overview
Contents
List of Model Reactions
*1 Reactions taking place only in the scenarios which includes the activating complex
*2 Reactions taking place only in the scenarios which includes the antisense RNA interactions
*3 Reactions taking place only in the scenarios which include the activation of scbA by
Reactions |
---|
*1
*1 *1 *1 *1 *1
*1 *3 *3 *3 *3 *2
*1 *2
|
Parameters for model reactions
Reaction | Parameter | Values in literature | Units | Mode | Spread | Location
parameter (μ) |
Scale
parameter (σ) |
---|---|---|---|---|---|---|---|
Binding of R2 to OR operator | 0.005−5.8 | 0.299 | 6.8 | 0.15471 | 1.1661 | ||
0.09−0.846 | 0.489 | 1.98 | −0.37642 | 0.58225 | |||
Binding of R2 to OA operator | 0.005−5.8 | 0.299 | 6.8 | 0.15471 | 1.1661 | ||
0.09−0.846 | 0.489 | 1.98 | −0.37642 | 0.58225 | |||
Binding of R2 to A | 10.02 | 13.192 | 1.2977 | ||||
1879.7 | 23.13 | 9.9423 | 1.5503 | ||||
Binding of R2 to C | 1.58 | 730.63 | 5.9389 | 2.3412 | |||
0.816 | 244 | 4.2872 | 2.119 | ||||
Binding of A-R2 to OA' operator | 0.005−5.8 | 0.299 | 6.8 | 0.15471 | 1.1661 | ||
0.09−0.846 | 0.489 | 1.98 | −0.37642 | 0.58225 | |||
Synthesis of C | 0.00315−85.5 | 0.094 | 60.49 | 0.87914 | 1.8017 | ||
Transcription of r | 0.16−8.24 | 0.8346 | 3.55 | 0.63056 | 0.90076 | ||
18.2−33 | 20.7 | 1.34 | 3.1107 | 0.28276 | |||
0.0518-14.5 | 0.867 | 4.09 | 0.78694 | 0.96428 | |||
Transcription of a | 0.001−0.2 | 0.0037 | 10.93 | −3.8324 | 1.3259 | ||
0.11−5.65 | 0.572 | 3.5 | 0.2514 | 0.89956 | |||
0.039-8.82 | 0.587 | 3.875 | 0.35255 | 0.94054 | |||
Antisense interaction between r and a | 0.4−89 | 7.8 | 7.27 | 3.4665 | 1.1882 | ||
0.006−6 | 0.223 | 4.8 | −0.43359 | 1.0326 | |||
Translation of R | 0.165−5.86 | 0.744 | 3.2 | 0.42952 | 0.85176 | ||
Translation of A | 0.11−4 | 0.5 | 3.2 | 0.053356 | 0.85327 | ||
Formation of homo-dimer R2 | 2.58-42.9 | 3.89 | 1.9 | 1.6716 | 0.55779 | ||
0.144-51.2 | 1.1997 | 21.7 | 2.5303 | 1.5324 | |||
Degradation of r | 0.03−0.365 | 0.14 | 2.06 | −1.5916 | 0.60824 | ||
Degradation of R | 1.78 | −6.2837 | 0.50981 | ||||
Degradation of R2 | 1.78 | −6.2837 | 0.50981 | ||||
Degradation of a | 0.03−0.365 | 0.14 | 2.06 | −1.5916 | 0.60824 | ||
Degradation of A | 1.78 | −6.2837 | 0.50981 | ||||
Degradation of C | 5.1 | −4.6234 | 1.0539 | ||||
Degradation of C2-R2 | 1.78 | −6.2837 | 0.50981 | ||||
Degradation of A-R2 | 1.78 | −6.2837 | 0.50981 | ||||
Degradation of r-a | 0.35−69.3 | 4.9 | 14.1 | 2.5669 | 0.98835 | ||
Diffusion of C and Ce | 0.1−24 | 2.8 | 4.27 | 1.9947 | 0.98233 | ||
Degradation of Ce | 5.1 | −4.6234 | 1.0539 |