Degradation Pathways

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Upon being transported out of the cell, the eicosanoids accumulate in the interstitial fluid, which for simplicity is referred to as the extracellular compartment in the model. A decay constant was included for each extracellular metabolite to represent degradation. To describe the breaking down of metabolites an irreversible mass action rate law was used for reactions 43-64. The half life of each eicosanoid was initially assumed as 24 hours, but will be made metabolite specific when all of the values have been collected.

Pseudo-first order reactions.  k = ln(2)/t(0.5)


Reaction # Species Half Life (min) Rate constant(min -1) Notes Reference
44 exPGF2a 900 ± 492 0.001 ± 0.001 Study performed in decidual stromal cells and macrophages in culture. [1]
45 exTXB2 20 to 30 0.035 to 0.023 Quoted in a textbook(https://books.google.co.uk/books?id=_9kEeTjyJdMC&pg=PA864&lpg=PA864&dq=half+life+txa2&source=bl&ots=2OTF4Mh2Jk&sig=hu79GprliUcW4QE_Zm79islesOA&hl=en&sa=X&ved=0ahUKEwj0oo2sgfjOAhXLIcAKHcaPDHQQ6AEIRjAI#v=onepage&q=half%20life%20txa2&f=false) with no ref.
46 exTXA2 0.333 2.079 Quoted in a textbook(https://books.google.co.uk/books?id=_9kEeTjyJdMC&pg=PA864&lpg=PA864&dq=half+life+txa2&source=bl&ots=2OTF4Mh2Jk&sig=hu79GprliUcW4QE_Zm79islesOA&hl=en&sa=X&ved=0ahUKEwj0oo2sgfjOAhXLIcAKHcaPDHQQ6AEIRjAI#v=onepage&q=half%20life%20txa2&f=false) with no ref.
47 ex6-KETO-PGF1A 30 0.0231 Human Plasma [2]
48 exPGI2 3 0.231 [3]
49 exPGE2 528 ± 204 0.001 ± 0.003 Study performed in decidual stromal cells and macrophages in culture. [1]
50 ex15-DEOXY-PGJ2 720 0.001 Dehydration of PGD2 to ultimatley 15d-PGJ2 occurs with a half life of about 12 hours in the presense of albumin (protien found in blood). [4]
51 exPGJ2
52 exPGD2 1.5 - 1.6 0.462 to 0.433 Human brain [5]
30 0.023 Human plasma [6]
53 exPGH2 5 0.139 Quoted on supplier page (http://www.enzolifesciences.com/BML-PH002/prostaglandin-h2/)
54 ex5-OXO-ETE 11 0.064 Study half life of 15-OXO-ETE in in R15L Cells [7]
55 ex5-HETE
56 exLTB4 0.47 ± 0.02 to 0.63 ± 0.04 1.475 ± 34.657 to 1.100 ± 17.329 Rabbit, Immunoreactive LTB4 [8]
57 exLTC4
58 exLTA4 0.05 13.863 37 degrees C [9]
59 ex5-HPETE
60 ex15-HETE 21 0.0331 Study in R15L Cells [7]
61 ex15-HPETE
62 ex12-HETE 180 0.004 "During the first 2 min., the half-life of 12-HETE was 0.9 s, which implies

a fast clearance of the compound from the circulation. However, during the subsequent half-hour the estimated half-life was 3 min. and increased dramatically at the interval of time from 30 to 60 min. (t1/2 around 3 h)."

[10]
63 ex12-HPETE 0.5 1.386 [11]
64 exAA 240 to 660 0.003 to 0.001 [12]


References

  1. 1.0 1.1 O. Ishihara, "Differences of metabolism of prostaglandin E2 and F2 alpha by decidual stromal cells and macrophages in culture." Eicosanoids. 1991;4(4):203-7.
  2. Ylikorkala, "Measurement of 6-keto-prostaglandin E1 alpha in human plasma with radioimmunoassay: effect of prostacyclin infusion." Prostaglandins Med. 1981 Apr;6(4):427-36.
  3. Cawello W., "Metabolism and pharmacokinetics of prostaglandin E1 administered by intravenous infusion in human subjects." Eur J Clin Pharmacol. 1994;46(3):275-7.
  4. F. Fitzpatrick, "Albumin-catalyzed metabolism of prostaglandin D2. Identification of products formed in vitro." J Biol Chem. 1983 Oct 10;258(19):11713-8.
  5. Suzuki F. "Transport of prostaglandin D2 into brain." Brain Res. 1986 Oct 22;385(2):321-8.
  6. R. Schuligoi. "PGD2 metabolism in plasma: Kinetics and relationship with bioactivity on DP1 and CRTH2 receptors" Biochemical Pharmacology, Volume 74, Issue 1, 30 June 2007, Pages 107-117
  7. 7.0 7.1 Cong W., "15-oxo-Eicosatetraenoic Acid, a Metabolite of Macrophage 15-Hydroxyprostaglandin Dehydrogenase That Inhibits Endothelial Cell Proliferation" Mol Pharmacol. 2009 Sep; 76(3): 516–525.
  8. Marleau S., "Metabolic disposition of leukotriene B4 (LTB4) and oxidation-resistant analogues of LTB4 in conscious rabbits." Br J Pharmacol. 1994 Jun;112(2):654-8.
  9. Zimmer J., "Fatty acid binding proteins stabilize leukotriene A4 competition with arachidonic acid but not other lipoxygenase products" November 2004 The Journal of Lipid Research, 45, 2138-2144.
  10. Dadaian M., "12-hydroxyeicosatetraenoic acid is a long-lived substance in the rabbit circulation." Prostaglandins Other Lipid Mediat. 1998 Jan;55(1):3-25.
  11. J. Maclouf, "Stimulation of leukotriene biosynthesis in human blood leukocytes by platelet-derived 12-hydroperoxy-icosatetraenoic acid" (1982) Proc. Natl. Acad. Sci. U. S. A. 79, 6042-6046
  12. Vinge E., "Arachidonic acid-induced platelet aggregation and prostanoid formation in whole blood in relation to plasma concentration of indomethacin." Eur J Clin Pharmacol. 1985;28(2):163-9.