Difference between revisions of "Degradation of Ce"

From ISMOC
Jump to: navigation, search
(Parameters)
(Parameters)
 
(4 intermediate revisions by the same user not shown)
Line 5: Line 5:
 
default [[Welcome to the In-Silico Model of γ-butyrolactone regulation in Streptomyces coelicolor|Go back to overview]]
 
default [[Welcome to the In-Silico Model of γ-butyrolactone regulation in Streptomyces coelicolor|Go back to overview]]
 
</imagemap>
 
</imagemap>
 +
 +
  
 
==Chemical equation==
 
==Chemical equation==
Line 16: Line 18:
 
== Parameters ==
 
== Parameters ==
  
The parameter of this reaction is the degradation rate of C<sub>e</sub> (<math>d_{C}</math>), which is assumed to be the same as the degradation of the cellular SCB1 (C). Detailed information on this parameter can be found [[Degradation of C|here]].
+
The parameter of this reaction is the degradation rate of C<sub>e</sub> (<math>d_{C}</math>), which is assumed to be the same as the degradation of the cellular SCB1 (C) in this model. Detailed information on this parameter can be found in the [[Degradation of C|Degradation of C]].
 
 
==Parameters with uncertainty==
 
 
 
The most plausible parameter value for the <math>d_{C}</math> is decided to be <math> 0.0002 min^{-1} </math> and the confidence interval <math> 2 </math>. This means that the mode of the PDF is 0.0002 and the range where 95% of the values are found is between <math>0.0001</math> and <math>0.0004 min^{-1}</math>.
 
 
 
The probability distribution for the parameter, adjusted accordingly in order to reflect the above values, is the following:
 
 
 
[[Image:DC.png|500px]]
 
 
 
The location and scale parameters of the distribution are:
 
{|class="wikitable"
 
! Parameter
 
! μ
 
! σ
 
|-
 
|<math>d_{C}</math>
 
|<math>-8.4046</math>
 
|<math>0.3356</math>
 
|}
 
 
 
==References==
 
<references/>
 

Latest revision as of 11:33, 25 September 2017

The extracellular SCB1 protein (Ce) degrades.

Go back to overview
About this image


Chemical equation

C_{e}\rightarrow \varnothing

Rate equation

 r= d_{C}\cdot[C_{e}]

Parameters

The parameter of this reaction is the degradation rate of Ce (d_{C}), which is assumed to be the same as the degradation of the cellular SCB1 (C) in this model. Detailed information on this parameter can be found in the Degradation of C.