Difference between revisions of "UDPG-pyrophosphorylase"

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(Equilibrium constant)
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| 0.48+/-0.015 (mean+/-SEM; n=7)
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| <math>0.20 \pm 0.08</math>
| pH=7, T=25°C, 10mM Mg2+
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| pH=7 and 7.9, T=25°C, 10mM Mg2+
| NIST database "Thermodynamics of Enzyme-Catalyzed Reactions" entry [[http://xpdb.nist.gov/enzyme_thermodynamics/enzyme_data1.pl?T1=58TUR/TUR_684]] from Atkinson et al. (1958) <ref name="Turner">Turner, D.H.; Turner, J.F.; Biochem. J.; 69, 448 (1958)</ref>
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| NIST database "Thermodynamics of Enzyme-Catalyzed Reactions" entry [[http://xpdb.nist.gov/enzyme_thermodynamics/enzyme_data1.pl?T1=58TUR/TUR_684]] from Atkinson et al. (1958) <ref name="Turner">Turner, D.H.; Turner, J.F.; Biochem. J.; 69, 448 (1958)</ref> reported 4 values for Keq; 0.119, 0.286, 0.139, 0.263. Taking mean and std. for these values give <math>K_{eq} = 0.20 \pm 0.08 </math>(n=4).
Therefore, <math>K_{eq} = 0.20 \pm 0.08 </math>(n=4).
 
 
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==References==
 
==References==
 
<references/>
 
<references/>

Revision as of 11:43, 1 July 2014

This enzyme converts UTP and G1P to UDP-glucose (UDPG) and pyrophosphate (PPi)

Chemical equation

 UTP + Glc1P \leftrightarrow UDPG + PPi

Rate equation

Reversible Bi substrate Michaelis-Menten equation with random binding order is used [1]

 \frac{ \frac{V_{max}}{K_{UTP}K_{Glc1P}} \left( [UTP][Glc1P] - \frac{[UDPG][PPi]}{K_{eq}} \right)  }{ \left( 1 + \frac{[UTP]}{K_{UTP}} + \frac{[PPi]}{K_{PPi}} \right) \left( 1 + \frac{[UDPG]}{K_{UDPG}} + \frac{[Glc1P]}{K_{Glc1P}} \right)  }

Parameter values

Parameter Value Units Organism Remarks
V_{max} 200 [2] min^{-1} Recombinant, human muscle
K_{Glc1P} 0.4 [3] mM
K_{UTP} 0.92 [3] mM
K_{UDPG}  6.3 \times 10^{-2} [3] mM
K_{ppi} 0.38[3] mM
K_{eq} 0.24[4] Dimensionless


Parameters with uncertainty

  • The value of V_{max} is reported to be 9.6 % of V_{max, PGLM}. The Std. Dev. for V_{max, PGLM} was considered to be 10.5% of its mean value. Same error percentage is considered for V_{max}.
Parameter Value Units Organism Remarks
V_{max} 200 \pm 21 [2] min^{-1} Recombinant, human muscle
K_{Glc1P}  0.4 \pm 0.051 [3] mM
K_{UTP} 0.97 \pm 0.08 [3] mM
K_{UDPG}  0.063 \pm 0.006 [3] mM
K_{ppi} 0.38 \pm 0.036[3] mM
K_{eq} 0.20 \pm 0.08 Dimensionless

Equilibrium constant

Equilibrium constant Conditions Source
0.20 \pm 0.08 pH=7 and 7.9, T=25°C, 10mM Mg2+ NIST database "Thermodynamics of Enzyme-Catalyzed Reactions" entry [[1]] from Atkinson et al. (1958) [5] reported 4 values for Keq; 0.119, 0.286, 0.139, 0.263. Taking mean and std. for these values give K_{eq} = 0.20 \pm 0.08 (n=4).

References

  1. Palm, D.C. (2013). The regulatory design of glycogen metabolism in mammalian skeletal muscle (Ph.D.). University of Stellenbosch
  2. 2.0 2.1 Villar-Palasi C & Larner J (1960). Levels of activity of the enzymes of the glycogen cycle in rat tissues. Arch Biochem Biophys 86, 270–273.
  3. 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 Duggleby RG, Chao YC, Huang JG, Peng HL & Chang HY (1996). Sequence differences between human muscle and liver cDNAs for UDPglucose pyrophosphorylase and kinetic properties of the recombinant enzymes expressed in Escherichia coli. Eur J Biochem 235, 173–179.
  4. Bergamini C, Signorini M, Ferrari C & Dallocchio F (1983), Non-Michaelian kinetics of rabbit muscle uridine diphosphoglucose pyrophosphorylase, Arch Biochem Biophys 227, 397–405
  5. Turner, D.H.; Turner, J.F.; Biochem. J.; 69, 448 (1958)