Translation of R

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The scbR mRNA (r) is translated into ScbR protein (R).

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Chemical equation

r \rightarrow r + R

Rate equation

 r= P_{R}\cdot [r]

Parameters

The parameter of this reaction is the translation rate of ScbR (P_{R}).

Name Value Units Origin Remarks
P_{R} Failed to parse (Cannot store math image on filesystem.): 0.88 [1]  min^{-1} Streptomyces coelicolor A3(2) Translation values were calculated according to the rates proposed in the paper by R.A. Cox using the basepairs for each gene.

Parameters with uncertainty

The most plausible parameter value for the P_{R} is decided to be Failed to parse (Cannot store math image on filesystem.): 0.5 min^{-1} and the confidence interval 10. This means that the mode of the PDF is 0.5 and the range where 95% of the values are found is between 0.05 and 5 min^{-1}.

The probability distributions for the parameter, adjusted accordingly in order to reflect the above values, is the following:

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The location and scale parameters of the distribution are:

Parameter μ σ
P_{R} Failed to parse (Cannot store math image on filesystem.): 0.1220 0.9028

References

  1. Cox RA. Quantitative relationships for specific growth rates and macromolecular compositions of Mycobacterium tuberculosis, Streptomyces coelicolor A3(2) and Escherichia coli B/r: an integrative theoretical approach. Microbiology. 2004 May;150(Pt 5):1413-26.