Limonene Synthase

From ISMOC
Revision as of 14:21, 19 February 2016 by Aliah.hawari (talk | contribs) (Strategies for Kinetic Parameter Estimation)
Jump to: navigation, search

You can go back to main page of the kinetic model here.

What we know

Issues

reference test [1]

reference test 2[2]

reference test 3 [3]

Strategies

Reaction catalysed

Failed to parse (Cannot store math image on filesystem.):  \begin{align}   Geranyl diphosphate  {\begin{smallmatrix}\displaystyle\longrightarrow \\ \displaystyle\longleftarrow \end{smallmatrix}}  Limonene + Diphosphate \end{align}


Metabolite Background Information

Long metabolite names are abbreviated in the model for clarity and standard identification purposes.

Metabolite Abbreviation Chemical Formula Molar mass (g/mol) ChEBI ChEMBL PubChem
Geranyldiphosphate GPP C10H20O7P2 314.209 17211 41432 445995
Limonene Limonene C10H16 136.24 15384 449062 22311 or 439250
Diphosphate PP O7P2 173.94 644102

Equation Rate

Strategies for estimating the kinetic parameter values

Calculating the Equilibrium Constant

Extracting Information from Limonene Production Rates

Published Kinetic Parameter Values

Simulations

References

  1. AHawari BMC Bioinformatics
  2. Carter, Ora A. et. al. "Monoterpene biosynthesis pathway construction in Escherichia coli",Phytochemistry, 64:425–433, 2003.
  3. Plunkett, John. "Sorrell accuses Murdoch of panic buying", The Guardian, London, 27 October 2005. Retrieved on 27 October 2005.