Difference between revisions of "Enolase"

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(Parameters with uncertainty)
(Parameters with uncertainty)
 
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|<math>V_{mf}</math>
|<math>0.36 \pm 0.15 (5)</math> <ref name="Hernandez_2006"> Marín-Hernández A , Rodríguez-Enríquez S, Vital-González P A, ''et al.'' (2006). ''Determining and understanding the control of glycolysis in fast-growth tumor cells. Flux control by an over-expressed but strongly product-inhibited hexokinase''. FEBS J., 273 , pp. 1975–1988([http://dx.doi.org/doi:10.1111/j.1742-4658.2006.05214.x doi]) </ref> <math>23.4 \pm 9.75</math>
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|<math>0.36 \pm 0.15 (5)</math> <ref name="Hernandez_2006"> Marín-Hernández A , Rodríguez-Enríquez S, Vital-González P A, ''et al.'' (2006). ''Determining and understanding the control of glycolysis in fast-growth tumor cells. Flux control by an over-expressed but strongly product-inhibited hexokinase''. FEBS J., 273 , pp. 1975–1988([http://dx.doi.org/doi:10.1111/j.1742-4658.2006.05214.x doi]) </ref> <br><math>23.4 \pm 9.75</math>
 
|<math>U\cdot(\text{mg protein})^{-1}</math><br><math> \text{mM min}^{-1} </math>
 
|<math>U\cdot(\text{mg protein})^{-1}</math><br><math> \text{mM min}^{-1} </math>
 
|HeLa cell line
 
|HeLa cell line

Latest revision as of 11:07, 16 October 2014

Enolase, also known as phosphopyruvate hydratase, catalysis the conversion of 2-phosphoglycerate (2-PG) to phosphoenolpyruvate (PEP). This is the penultimate step of glycolysis.

Chemical equation

2PG \rightleftharpoons PEP

Rate equation

Mono-substrate reversible Michaelis-Menten equation is used. [1]

 \frac{V_{mf}\frac{[2PG]}{K_{2PG}}-V_{mr}\frac{[PEP]}{K_{PEP}}}{1 + \frac{[2PG]}{K_{2PG}} + \frac{[PEP]}{K_{PEP}}}

Modified rate law to take Thermodynamic constraint into consideration

 \frac{V_{mf}\frac{[2PG]}{K_{2PG}} \left( 1 -\frac{[PEP]}{K_{eq} [2PG]} \right)}{1 + \frac{[2PG]}{K_{2PG}} + \frac{[PEP]}{K_{PEP}}}

Parameter values

Parameter Value Units Organism Remarks
V_{mf} 0.34 [2]  \text{mM min}^{-1} HeLa cell line
V_{mr} 0.38[1]  \text{mM min}^{-1}
Km_{2PG} 0.038[1] mM
Km_{PEP} 0.06[1] mM

Parameters with uncertainty

  • Three values for Km_{2PG} is collected. The values are 0.20 [3], 0.199 [3], 0.038 [1]. The mean and std. dev. is 0.145 \pm 0.07
  • Similarly for Km_{PEP} three reported values are 0.58, 0.702, 0.06. The uncertainty is then 0.44 \pm 0.276.
  • In Pietkiewicz et. al. (2009) [3] V_{mr} is reported as 1.4 mmol/min^{-1} and Marín-Hernández et. al. (2011) [1] reported it to be 0.4. The mean and the std. dev. calculated from these two values are 0.9 \pm 0.5.
Parameter Value Units Organism Remarks
V_{mf} 0.36 \pm 0.15 (5) [2]
23.4 \pm 9.75
U\cdot(\text{mg protein})^{-1}
 \text{mM min}^{-1}
HeLa cell line
V_{mr} 0.9 \pm 0.5  \text{mM min}^{-1}
Km_{2PG} 0.145 \pm 0.07 mM Human muscle
Km_{PEP} 0.44 \pm 0.276 mM Human muscle

Equilibrium constant

Equilibrium constant Conditions Source
3.6 pH=7, T=25°C Voet et al.[4] from Newshole et al. (1973) [5]p 97:

\Delta G' = -3.2\ kJ.mol^{-1}, Keq = exp(-\frac{\Delta G'}{RT}) = exp(\frac{3200}{8.31*298.15}) \approx 3.6

6.7 T=25°C Bergmeyer Methods of enzymatic analysis page 449[6]
2.03 pH=7, T=297.15 K From Meyerhof et al. (1947)[7]:

\Delta G' = -1.757\ kJ.mol^{-1}, Keq = exp(-\frac{\Delta G'}{RT}) = exp(\frac{1757}{8.31*298.15}) \approx 2.03

4.29 pH=7, T=298.15 K, c(MgSO4,mol dm-3) =0.001 From Wold et al. (1957) (NIST database[8] [57WOL/BAL_1173])
3.92 pH=7, T=298.15 K, c(MgSO4,mol dm-3) =0.01 From Wold et al. (1957) (NIST database[8] [57WOL/BAL_1173])
  • Taking average from these values give 4.1 \pm 1.68

References

  1. 1.0 1.1 1.2 1.3 1.4 1.5 Marín-Hernández A, Gallardo-Pérez JC, Rodríguez-Enríquez S et al (2011) Modeling cancer glycolysis. Biochim Biophys Acta 1807:755–767 (doi)
  2. 2.0 2.1 Marín-Hernández A , Rodríguez-Enríquez S, Vital-González P A, et al. (2006). Determining and understanding the control of glycolysis in fast-growth tumor cells. Flux control by an over-expressed but strongly product-inhibited hexokinase. FEBS J., 273 , pp. 1975–1988(doi)
  3. 3.0 3.1 3.2 Pietkiewicz, J., Gamian, A., Staniszewska, M., & Danielewicz, R. (2009), Inhibition of human muscle-specific enolase by methylglyoxal and irreversible formation of advanced glycation end products, Journal of Enzyme Inhibition and Medicinal Chemistry, 24, 356–364
  4. Voet, D., Voet., J.G. and Pratt, C. W. (1999) Fundamentals of biochemistry, Wiley
  5. Newshole, E.A. and Stuart, C. (1973) Regulation in Metabolism, Wiley
  6. Bergmeyer H.U. (1974) Methods of enzymatic analysis, Publisher: Verlag Chemie (vol 1)
  7. Meyerhof O. and Oesper P. (1947) J. Biol. Chem. 170(1):1-22 [J. Biol. Chem.]
  8. 8.0 8.1 Goldberg R.N., Tewari Y.B. and Bhat T.N. (2004) Bioinformatics 20(16):2874-2877 [pmid: 15145806]