Degradation of r

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The mRNA of ScbR (r) degrades.

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Chemical equation

r\rightarrow \varnothing

Rate equation

 r= d_{mR}\cdot[r]

Parameters

The parameter of this reaction is the degradation rate of r d_{mR}.

Name Value Units Origin Remarks
d_{mR} 0.045-0.4 [1] [2] min^{-1} Half life of mRNA in Gram positive bacteria (low GC content)

Half life of mRNA in Actinomycetes

Parameters with uncertainty

References

  1. Kristoffersen SM, Haase C, Weil MR, et al. Global mRNA decay analysis at single nucleotide resolution reveals segmental and positional degradation patterns in a Gram-positive bacterium. Genome Biology. 2012;13(4):R30.
  2. Ortiz-Ortiz, L. and Bojalil, L.F. and Yakoleff, V. Biological, Biochemical, and Biomedical Aspects of Actinomycetes. Elsevier, 2013