Difference between revisions of "Degradation of R2"
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== Rate equation == | == Rate equation == | ||
| − | <center><math> r= d_{ | + | <center><math> r= d_{R_{2}}\cdot[R_{2}]</math></center> |
== Parameters == | == Parameters == | ||
| Line 24: | Line 24: | ||
! Remarks | ! Remarks | ||
|- | |- | ||
| − | |<math>d_{ | + | |<math>d_{R_{2}}</math> |
|<math>0.000833-0.001667</math> <ref name="Trötschel2013"> Trötschel C, Albaum SP, Poetsch A. ''Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria.'' Microbial biotechnology. 2013;6(6):708-719.</ref> | |<math>0.000833-0.001667</math> <ref name="Trötschel2013"> Trötschel C, Albaum SP, Poetsch A. ''Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria.'' Microbial biotechnology. 2013;6(6):708-719.</ref> | ||
| <math>min^{-1}</math> | | <math>min^{-1}</math> | ||
| Line 46: | Line 46: | ||
! σ | ! σ | ||
|- | |- | ||
| − | |<math>d_{ | + | |<math>d_{R_{2}}</math> |
|<math>-6.7120</math> | |<math>-6.7120</math> | ||
|<math>0.174</math> | |<math>0.174</math> | ||
Revision as of 03:21, 2 October 2015
The ScbR homo-dimer (R2) degrades.
Contents
Chemical equation
Rate equation
![r= d_{R_{2}}\cdot[R_{2}]](/wiki/images/math/c/5/e/c5e7cd8f67a62c67acc417614bcee8ce.png)
Parameters
The parameter of this reaction is the degradation rate of R2 (
).
| Name | Value | Units | Origin | Remarks |
|---|---|---|---|---|
|
 [1]
|
|
Degradation rates of proteins in S. coelicolor
based on radioactive decay |
Parameters with uncertainty
The most plausible parameter value for the is decided to be 
and the confidence interval 
. This means that the mode of the PDF is 0.00118 and the range where 95% of the values are found is between 
and 
.
The probability distribution for the parameter, adjusted accordingly in order to reflect the above values, is the following:
The location and scale parameters of the distribution are:
| Parameter | μ | σ |
|---|---|---|
|
|
|
|
References
- ↑ Trötschel C, Albaum SP, Poetsch A. Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria. Microbial biotechnology. 2013;6(6):708-719.
